IGc2Immunoglobulin C-2 Type |
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SMART accession number: | SM00408 |
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Description: | - |
Interpro abstract (IPR003598): | The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 ), C1-set (constant-1; IPR003597 ), C2-set (constant-2; IPR008424 ) and I-set (intermediate; IPR013098 ) [ (PUBMED:9417933) ]. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [ (PUBMED:15327963) (PUBMED:11377196) ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system [ (PUBMED:10698639) ]. This entry represents a subtype of the immunoglobulin domain, and is found in a diverse range of protein families that includes glycoproteins, fibroblast growth factor receptors, vascular endothelial growth factor receptors, interleukin-6 receptor, and neural cell adhesion molecules. It also includes proteins that are classified as unassigned proteinase inhibitors belonging to MEROPS inhibitor families I2, I17 and I43 [ (PUBMED:14705960) ]. |
Family alignment: |
There are 363480 IGc2 domains in 114582 proteins in SMART's nrdb database.
Click on the following links for more information.
- Evolution (species in which this domain is found)
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Taxonomic distribution of proteins containing IGc2 domain.
This tree includes only several representative species. The complete taxonomic breakdown of all proteins with IGc2 domain is also avaliable.
Click on the protein counts, or double click on taxonomic names to display all proteins containing IGc2 domain in the selected taxonomic class.
- Disease (disease genes where sequence variants are found in this domain)
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SwissProt sequences and OMIM curated human diseases associated with missense mutations within the IGc2 domain.
Protein Disease Low affinity immunoglobulin gamma Fc region receptor III-A (P08637) (SMART) OMIM:146740: {Lupus erythematosus, systemic, susceptibility}
OMIM:152700: Neutropenia, alloimmune neonatal ; {Viral infections, recurrent}Netrin receptor DCC (P43146) (SMART) OMIM:120470: Colorectal cancer Fibroblast growth factor receptor 2 (P21802) (SMART) OMIM:176943: Crouzon syndrome
OMIM:123500: Jackson-Weiss syndrome
OMIM:123150: Beare-Stevenson cutis gyrata syndrome
OMIM:123790: Pfeiffer syndrome
OMIM:101600: Apert syndrome
OMIM:101200: Saethre-Chotzen syndromeLow affinity immunoglobulin gamma Fc region receptor II-a (P12318) (SMART) OMIM:146790: {Lupus nephritis, susceptibility to} Myosin-binding protein C, cardiac-type (Q14896) (SMART) OMIM:600958: Cardiomyopathy, familial hypertrophic, 4
OMIM:115197:Neural cell adhesion molecule L1 (P32004) (SMART) OMIM:308840: Hydrocephalus due to aqueductal stenosis
OMIM:307000: MASA syndrome
OMIM:303350: Spastic paraplegia
OMIM:312900: - Metabolism (metabolic pathways involving proteins which contain this domain)
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Click the image to view the interactive version of the map in iPath% proteins involved KEGG pathway ID Description 19.92 map04514 Cell adhesion molecules (CAMs) 9.21 map04060 Cytokine-cytokine receptor interaction 7.59 map04360 Axon guidance 7.18 map04810 Regulation of actin cytoskeleton 6.23 map04640 Hematopoietic cell lineage 6.10 map04510 Focal adhesion 4.88 map04670 Leukocyte transendothelial migration 3.79 map05215 Prostate cancer 2.98 map04520 Adherens junction 2.85 map04662 B cell receptor signaling pathway 2.85 map04660 T cell receptor signaling pathway 2.57 map05120 Epithelial cell signaling in Helicobacter pylori infection 2.57 map04020 Calcium signaling pathway 2.57 map04010 MAPK signaling pathway 2.57 map05218 Melanoma 1.90 map05210 Colorectal cancer 1.22 map04370 VEGF signaling pathway 1.22 map05214 Glioma 1.22 map04540 Gap junction 1.08 map05219 Bladder cancer 1.08 map04012 ErbB signaling pathway 0.95 map04916 Melanogenesis 0.95 map04530 Tight junction 0.95 map04620 Toll-like receptor signaling pathway 0.95 map04940 Type I diabetes mellitus 0.95 map05221 Acute myeloid leukemia 0.81 map04910 Insulin signaling pathway 0.54 map00940 Phenylpropanoid biosynthesis 0.54 map04512 ECM-receptor interaction 0.54 map00680 Methane metabolism 0.54 map04664 Fc epsilon RI signaling pathway 0.54 map00360 Phenylalanine metabolism 0.14 map04650 Natural killer cell mediated cytotoxicity This information is based on mapping of SMART genomic protein database to KEGG orthologous groups. Percentage points are related to the number of proteins with IGc2 domain which could be assigned to a KEGG orthologous group, and not all proteins containing IGc2 domain. Please note that proteins can be included in multiple pathways, ie. the numbers above will not always add up to 100%.
- Structure (3D structures containing this domain)
3D Structures of IGc2 domains in PDB
PDB code Main view Title 1bih CRYSTAL STRUCTURE OF THE INSECT IMMUNE PROTEIN HEMOLIN: A NEW DOMAIN ARRANGEMENT WITH IMPLICATIONS FOR HOMOPHILIC ADHESION 1cs6 N-TERMINAL FRAGMENT OF AXONIN-1 FROM CHICKEN 1cvs CRYSTAL STRUCTURE OF A DIMERIC FGF2-FGFR1 COMPLEX 1djs LIGAND-BINDING PORTION OF FIBROBLAST GROWTH FACTOR RECEPTOR 2 IN COMPLEX WITH FGF1 1e07 Model of human carcinoembryonic antigen by homology modelling and curve-fitting to experimental solution scattering data 1e0o Crystal structure of a ternary FGF1-FGFR2-heparin complex 1epf CRYSTAL STRUCTURE OF THE TWO N-TERMINAL IMMUNOGLOBULIN DOMAINS OF THE NEURAL CELL ADHESION MOLECULE (NCAM) 1ev2 CRYSTAL STRUCTURE OF FGF2 IN COMPLEX WITH THE EXTRACELLULAR LIGAND BINDING DOMAIN OF FGF RECEPTOR 2 (FGFR2) 1evt CRYSTAL STRUCTURE OF FGF1 IN COMPLEX WITH THE EXTRACELLULAR LIGAND BINDING DOMAIN OF FGF RECEPTOR 1 (FGFR1) 1f2q CRYSTAL STRUCTURE OF THE HUMAN HIGH-AFFINITY IGE RECEPTOR 1f42 THE P40 DOMAIN OF HUMAN INTERLEUKIN-12 1f45 HUMAN INTERLEUKIN-12 1f6a Structure of the human ige-fc bound to its high affinity receptor fc(epsilon)ri(alpha) 1fhg HIGH RESOLUTION REFINEMENT OF TELOKIN 1fq9 CRYSTAL STRUCTURE OF A TERNARY FGF2-FGFR1-HEPARIN COMPLEX 1gl4 Nidogen-1 G2/Perlecan IG3 Complex 1h5b T cell receptor Valpha11 (AV11S5) domain 1ie5 NMR STRUCTURE OF THE THIRD IMMUNOGLOBULIN DOMAIN FROM THE NEURAL CELL ADHESION MOLECULE. 1ii4 CRYSTAL STRUCTURE OF SER252TRP APERT MUTANT FGF RECEPTOR 2 (FGFR2) IN COMPLEX WITH FGF2 1iil CRYSTAL STRUCTURE OF PRO253ARG APERT MUTANT FGF RECEPTOR 2 (FGFR2) IN COMPLEX WITH FGF2 1j86 HUMAN HIGH AFFINITY FC RECEPTOR FC(EPSILON)RI(ALPHA), MONOCLINIC CRYSTAL FORM 2 1j87 HUMAN HIGH AFFINITY FC RECEPTOR FC(EPSILON)RI(ALPHA), HEXAGONAL CRYSTAL FORM 1 1j88 HUMAN HIGH AFFINITY FC RECEPTOR FC(EPSILON)RI(ALPHA), TETRAGONAL CRYSTAL FORM 1 1j89 HUMAN HIGH AFFINITY FC RECEPTOR FC(EPSILON)RI(ALPHA), TETRAGONAL CRYSTAL FORM 2 1jbj CD3 Epsilon and gamma Ectodomain Fragment Complex in Single-Chain Construct 1koa TWITCHIN KINASE FRAGMENT (C.ELEGANS), AUTOREGULATED PROTEIN KINASE AND IMMUNOGLOBULIN DOMAINS 1l6z CRYSTAL STRUCTURE OF MURINE CEACAM1A[1,4]: A CORONAVIRUS RECEPTOR AND CELL ADHESION MOLECULE IN THE CEA FAMILY 1n26 Crystal Structure of the extra-cellular domains of Human Interleukin-6 Receptor alpha chain 1nct TITIN MODULE M5, N-TERMINALLY EXTENDED, NMR 1ncu TITIN MODULE M5, N-TERMINALLY EXTENDED, NMR 1nun Crystal Structure Analysis of the FGF10-FGFR2b Complex 1qz1 Crystal Structure of the Ig 1-2-3 fragment of NCAM 1rhf Crystal Structure of human Tyro3-D1D2 1rpq High Affinity IgE Receptor (alpha chain) Complexed with Tight-Binding E131 'zeta' Peptide from Phage Display 1ry7 Crystal Structure of the 3 Ig form of FGFR3c in complex with FGF1 1sy6 Crystal Structure of CD3gammaepsilon Heterodimer in Complex with OKT3 Fab Fragment 1tlk X-RAY STRUCTURE DETERMINATION OF TELOKIN, THE C-TERMINAL DOMAIN OF MYOSIN LIGHT CHAIN KINASE, AT 2.8 ANGSTROMS RESOLUTION 1tnm TERTIARY STRUCTURE OF AN IMMUNOGLOBULIN-LIKE DOMAIN FROM THE GIANT MUSCLE PROTEIN TITIN: A NEW MEMBER OF THE I SET 1tnn TERTIARY STRUCTURE OF AN IMMUNOGLOBULIN-LIKE DOMAIN FROM THE GIANT MUSCLE PROTEIN TITIN: A NEW MEMBER OF THE I SET 1u2h X-ray Structure of the N-terminally truncated human APEP-1 1wvz Solution Structure of the D2 Domain of the Fibroblast Growth Factor 1xiw Crystal structure of human CD3-e/d dimer in complex with a UCHT1 single-chain antibody fragment 1xmw CD3 EPSILON AND DELTA ECTODOMAIN FRAGMENT COMPLEX IN SINGLE-CHAIN CONSTRUCT 1ya5 Crystal structure of the titin domains z1z2 in complex with telethonin 2a38 Crystal structure of the N-Terminus of titin 2ckn NMR Structure of the First Ig Module of mouse FGFR1 2cpc Solution structure of RSGI RUH-030, an Ig like domain from human cDNA 2cr3 Solution structure of the first Ig-like domain of human fibroblast growth factor receptor 1 2d3v Crystal Structure of Leukocyte Ig-like Receptor A5 (LILRA5/LIR9/ILT11) 2dl9 Solution structure of the Ig-like domain of human Leucine-rich repeat-containing protein 4 2dm2 Solution structure of the first ig domain of human palladin 2dm3 Solution structure of the second ig domain of human palladin 2dm7 Solution structure of the 14th Ig-like domain of human KIAA1556 protein 2e9w Crystal structure of the extracellular domain of Kit in complex with stem cell factor (SCF) 2ec8 Crystal structure of the exctracellular domain of the receptor tyrosine kinase, Kit 2edf Solution structure of the second ig-like domain(2826-2915) from human Obscurin 2edj Solution structure of the fifth ig-like domain from human Roundabout homolog 2 2edl Solution structure of the ig-like domain (3801-3897) of human obscurin 2edw Solution structure of the I-set domain (3537-3630) of human obscurin 2ens Solution structure of the third ig-like domain from human Advanced glycosylation end product-specific receptor 2eo9 Solution structure of the fifth ig-like domain from human Roundabout homo1 2f8v Structure of full length telethonin in complex with the N-terminus of titin 2fdb Crystal Structure of Fibroblast growth factor (FGF)8b in complex with FGF Receptor (FGFR) 2c 2id5 Crystal Structure of the Lingo-1 Ectodomain 2iep Crystal structure of immunoglobulin-like domains 1 and 2 of the receptor tyrosine kinase MuSK 2jll Crystal structure of NCAM2 IgIV-FN3II 2kkq Solution NMR Structure of the Ig-like C2-type 2 Domain of Human Myotilin. Northeast Structural Genomics Target HR3158. 2le9 RAGEC2-S100A13 tetrameric complex 2lqr NMR structure of Ig3 domain of palladin 2ncm NEURAL CELL ADHESION MOLECULE, NMR, 20 STRUCTURES 2npl NMR Structure of CARD d2 Domain 2o26 Structure of a class III RTK signaling assembly 2om5 N-Terminal Fragment of Human TAX1 2r15 Crystal structure of the myomesin domains 12 and 13 2rik I-band fragment I67-I69 from titin 2rjm 3Ig structure of titin domains I67-I69 E-to-A mutated variant 2v5m Structural basis for Dscam isoform specificity 2v5r Structural basis for Dscam isoform specificity 2v5s Structural basis for Dscam isoform specificity 2v5t Crystal structure of NCAM2 Ig2-3 2v9q First and second Ig domains from human Robo1 2v9r First and second Ig domains from human Robo1 (Form 2) 2v9t Complex between the second LRR domain of Slit2 and The first Ig domain from Robo1 2vaj Crystal structure of NCAM2 Ig1 (I4122 cell unit) 2vr9 Drosophila Robo IG1-2 (tetragonal form) 2vra Drosophila Robo IG1-2 (monoclinic form) 2wim Crystal structure of NCAM2 IG1-3 2wp3 Crystal structure of the Titin M10-Obscurin like 1 Ig complex 2wv3 Neuroplastin-55 binds to and signals through the fibroblast growth factor receptor 2wwk Crystal structure of the Titin M10-Obscurin like 1 Ig F17R mutant complex 2wwm Crystal structure of the Titin M10-Obscurin like 1 Ig complex in space group P1 2xy1 CRYSTAL STRUCTURE OF NCAM2 IG3-4 2xy2 CRYSTAL STRUCTURE OF NCAM2 IG1-2 2xyc CRYSTAL STRUCTURE OF NCAM2 IGIV-FN3I 2y25 Crystal structure of the myomesin domains My11-My13 2y7q The high-affinity complex between IgE and its receptor Fc epsilon RI 2yd1 Crystal structure of the N-terminal Ig1-2 module of Drosophila Receptor Protein Tyrosine Phosphatase DLAR 2yd2 Crystal structure of the N-terminal Ig1-2 module of Human Receptor Protein Tyrosine Phosphatase Sigma 2yd3 Crystal structure of the N-terminal Ig1-2 module of Human Receptor Protein Tyrosine Phosphatase Sigma 2yd4 Crystal structure of the N-terminal Ig1-2 module of Chicken Receptor Protein Tyrosine Phosphatase Sigma 2yd5 Crystal structure of the N-terminal Ig1-2 module of Human Receptor Protein Tyrosine Phosphatase LAR 2yd6 Crystal structure of the N-terminal Ig1-2 module of Human Receptor Protein Tyrosine Phosphatase Delta 2yd7 Crystal structure of the N-terminal Ig1-2 module of Human Receptor Protein Tyrosine Phosphatase Delta 2yd8 Crystal structure of the N-terminal Ig1-2 module of Human Receptor Protein Tyrosine Phosphatase LAR in complex with sucrose octasulphate 2yd9 Crystal structure of the N-terminal Ig1-3 module of Human Receptor Protein Tyrosine Phosphatase Sigma 2yr3 Solution structure of the fourth Ig-like domain from myosin light chain kinase, smooth muscle 3b43 I-band fragment I65-I70 from titin 3caf Crystal Structure of hFGFR2 D2 Domain 3cu1 Crystal Structure of 2:2:2 FGFR2D2:FGF1:SOS complex 3d85 Crystal structure of IL-23 in complex with neutralizing FAB 3d87 Crystal structure of Interleukin-23 3dar Crystal structure of D2 domain from human FGFR2 3dmk Crystal structure of Down Syndrome Cell Adhesion Molecule (DSCAM) isoform 1.30.30, N-terminal eight Ig domains 3duh Structure of Interleukin-23 3ejj Structure of M-CSF bound to the first three domains of FMS 3euu Crystal structure of the FGFR2 D2 domain 3grw FGFR3 in complex with a Fab 3hmx Crystal structure of ustekinumab FAB/IL-12 complex 3j6n Kinetic and Structural Analysis of Coxsackievirus B3 Receptor Interactions and Formation of the A-particle 3j6o Kinetic and Structural Analysis of Coxsackievirus B3 Receptor Interactions and Formation of the A-particle 3jxa Immunoglobulin domains 1-4 of mouse CNTN4 3jz7 Crystal structure of the extracellular domains of coxsackie & adenovirus receptor from mouse (mCAR) 3k0w Crystal structure of the tandem IG-like C2-type 2 domains of the human mucosa-associated lymphoid tissue lymphoma translocation protein 1 3kld PTPRG CNTN4 complex 3knb Crystal structure of the titin C-terminus in complex with obscurin-like 1 3kvq Crystal structure of VEGFR2 extracellular domain D7 3laf Structure of DCC, a netrin-1 receptor 3lcy Titin Ig tandem domains A164-A165 3mj7 Crystal structure of the complex of JAML and Coxsackie and Adenovirus receptor, CAR 3mjg The structure of a platelet derived growth factor receptor complex 3mtr Crystal structure of the Ig5-FN1 tandem of human NCAM 3ncm NEURAL CELL ADHESION MOLECULE, MODULE 2, NMR, 20 STRUCTURES 3oj2 Crystal structure of FGF1 complexed with the ectodomain of FGFR2b harboring the A172F Pfeiffer syndrome mutation 3ojm Crystal Structure of FGF1 complexed with the ectodomain of FGFR2b harboring P253R Apert mutation 3ojv Crystal Structure of FGF1 complexed with the ectodomain of FGFR1c exhibiting an ordered ligand specificity-determining betaC'-betaE loop 3p3y Crystal structure of neurofascin homophilic adhesion complex in space group p6522 3p40 Crystal structure of neurofascin adhesion complex in space group p3221 3pqy Crystal Structure of 6218 TCR in complex with the H2Db-PA224 3puc Atomic resolution structure of titin domain M7 3pxh Tandem Ig domains of tyrosine phosphatase LAR 3pxj Tandem Ig repeats of Dlar 3qqn The retinal specific CD147 Ig0 domain: from molecular structure to biological activity 3qr2 Wild type CD147 Ig0 domain 3qwr Crystal structure of IL-23 in complex with an adnectin 3r08 Crystal structure of mouse cd3epsilon in complex with antibody 2C11 Fab 3r4d Crystal structure of mouse coronavirus receptor-binding domain complexed with its murine receptor 3rjd Crystal structure of Fc RI and its implication to high affinity immunoglobulin G binding 3s97 PTPRZ CNTN1 complex 3so5 Crystal structure of an Immunoglobulin I-set domain of Lrig3 protein (Lrig3) from MUS MUSCULUS at 1.70 A resolution 3uto Twitchin kinase region from C.elegans (Fn31-NL-kin-CRD-Ig26) 3v2a VEGFR-2/VEGF-A COMPLEX STRUCTURE 3v6b VEGFR-2/VEGF-E complex structure 3zyi NetrinG2 in complex with NGL2 3zyj NetrinG1 in complex with NGL1 3zyo Crystal structure of the N-terminal leucine rich repeats and immunoglobulin domain of netrin-G ligand-3 4c4k 4C4K 4cbp 4CBP 4dkd Crystal Structure of Human Interleukin-34 Bound to Human CSF-1R 4exp Structure of mouse Interleukin-34 in complex with mouse FMS 4grw Structure of a complex of human IL-23 with 3 Nanobodies (Llama vHHs) 4hwu Crystal structure of the Ig-C2 type 1 domain from mouse Fibroblast growth factor receptor 2 (FGFR2) [NYSGRC-005912] 4j23 Low resolution crystal structure of the FGFR2D2D3/FGF1/SR128545 complex 4kc3 Cytokine/receptor binary complex 4liq 4LIQ 4lp5 Crystal structure of the full-length human RAGE extracellular domain (VC1C2 fragment) 4oe8 4OE8 4ofp Crystal Structure of SYG-2 D3-D4 4ofy Crystal Structure of the Complex of SYG-1 D1-D2 and SYG-2 D1-D4 4og9 4OG9 4oqt LINGO-1/Li81 Fab complex 4p2y 4P2Y 4pbv 4PBV 4pbw 4PBW 4pbx 4PBX 4rca 4RCA 4u7m 4U7M 4uow 4UOW 4w4o 4W4O 4wrl 4WRL 4wrm 4WRM 4wv1 4WV1 4x4m 4X4M 4x83 4X83 4x8x 4X8X 4x9b 4X9B 4x9f 4X9F 4x9g 4X9G 4x9h 4X9H 4x9i 4X9I 4xb7 4XB7 4xb8 4XB8 4xhq 4XHQ 4y61 4Y61 4ybh 4YBH 4yfc 4YFC 4yfd 4YFD 4yfg 4YFG 4yh6 4YH6 4yh7 4YH7 4zne 4ZNE 5aea 5AEA 5e4i 5E4I 5e5r 5E5R 5e5u 5E5U 5eo9 5EO9 5f1d 5F1D 5fm5 5FM5 5ftt 5FTT 5i99 5I99 5k6u 5K6U 5k6v 5K6V 5k6w 5K6W 5k6x 5K6X 5k6y 5K6Y 5k6z 5K6Z 5k70 5K70 - Links (links to other resources describing this domain)
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PFAM ig INTERPRO IPR003598