The domain within your query sequence starts at position and ends at position ; the E-value for the VPS9 domain shown below is < 1e-12.
VPS9Domain present in VPS9
|SMART accession number:||SM00167|
|Description:||Domain present in yeast vacuolar sorting protein 9 and other proteins.|
|Interpro abstract (IPR003123):|
Rab proteins form a family of signal-transducing GTPases that cycle between active GTP-bound and inactive GDP-bound forms. The Rab5 GTPase is an essential regulator of endocytosis and endosome biogenesis. Rab5 is activated by GDP-GTP exchange factors (GEFs) that contain a VPS9 domain and generate the Rab5-GTP complex [(PUBMED:16330212)]. The VPS9 domain catalyzes nucleotide exchange on Rab5 or the yeast homologue VPS21. The domain has a length of ~140 residues and forms the central part of the yeast VPS9 (vacuolar protein sorting-associated) protein, which acts as a GEF for VPS21. Some domains which can occur in combination with the VPS9 domain are CUE, A20-type zinc finger, Ras-associating (RA), SH2, RCC1, DH, PH, rasGAP, MORN and ankyrin repeat.
Structurally, the VPS9 domain adopts a layered fold of six alpha helices. Conserved residues from the fourth and sixth helices and the loops N-terminal to these helices form the surface that interacts with Rab5 and Rab21 [(PUBMED:15339665)].
Some proteins known to contain a VPS9 domain:
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