E2_bind |
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| SMART accession number: | SM01181
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| Description: |
E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The domain resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains (PUBMED:15694336). |
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| Family alignment: |
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There are 146
E2_bind domains in 146 proteins in SMART's nrdb database.
Click on the following links for more information.
- Evolution (species in which this domain is found)
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- Literature (relevant references for this domain)
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Primary literature is listed below; Automatically-derived, secondary literature is also avaliable.
- Huang DT, Paydar A, Zhuang M, Waddell MB, Holton JM, Schulman BA
- Structural basis for recruitment of Ubc12 by an E2 binding domain in NEDD8's E1.
- Mol Cell. 2005; 17: 341-50
- Display abstract
E2 conjugating enzymes play a central role in ubiquitin and ubiquitin-likeprotein (ublp) transfer cascades: the E2 accepts the ublp from the E1 enzyme and then the E2 often interacts with an E3 enzyme to promote ublp transfer to thetarget. We report here the crystal structure of a complex between the C-terminal domain from NEDD8's heterodimeric E1 (APPBP1-UBA3) and the catalytic core domain of NEDD8's E2 (Ubc12). The structure and associated mutational analyses revealmolecular details of Ubc12 recruitment by NEDD8's E1. Interestingly, the E1'sUbc12 binding domain resembles ubiquitin and recruits Ubc12 in a manner mimickingubiquitin's interactions with ubiquitin binding domains. Structural comparisonwith E2-E3 complexes indicates that the E1 and E3 binding sites on Ubc12 mayoverlap and raises the possibility that crosstalk between E1 and E3 interactingwith an E2 could influence the specificity and processivity of ublp transfer.
- Structure (3D structures containing this domain)
3D Structures of E2_bind domains in PDB
| PDB code | Main view | Title | | 1r4m |  | Appbp1-uba3-nedd8, an e1-ubiquitin-like protein complex |
| 1r4n |  | Appbp1-uba3-nedd8, an e1-ubiquitin-like protein complex with atp |
| 1tt5 |  | Structure of appbp1-uba3-ubc12n26: a unique e1-e2 interaction required for optimal conjugation of the ubiquitin-like protein nedd8 |
| 1y8x |  | Structural basis for recruitment of ubc12 by an e2-binding domain in nedd8's e1 |
| 1yov |  | Insights into the ubiquitin transfer cascade from the refined structure of the activating enzyme for nedd8 |
| 2nvu |  | Structure of appbp1-uba3~nedd8-nedd8-mgatp-ubc12(c111a), a trapped ubiquitin-like protein activation complex |
| 3dbh |  | Structural dissection of a gating mechanism preventing misactivation of ubiquitin by nedd8's e1 (appbp1- uba3arg190ala-nedd8ala72arg) |
| 3dbl |  | Structural dissection of a gating mechanism preventing misactivation of ubiquitin by nedd8's e1 (appbp1- uba3arg190wt-nedd8ala72gln) |
| 3dbr |  | Structural dissection of a gating mechanism preventing misactivation of ubiquitin by nedd8's e1 (appbp1- uba3arg190gln-nedd8ala72arg) |
| 3fn1 |  | E2-ring expansion of the nedd8 cascade confers specificity to cullin modification. |
- Links (links to other resources describing this domain)
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