S_100S-100/ICaBP type calcium binding domain |
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SMART accession number: | SM01394 |
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Description: | - |
Interpro abstract (IPR013787): | The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain [ (PUBMED:15284904) ]. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells [ (PUBMED:15006498) ]. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system [ (PUBMED:16288660) ]. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion [ (PUBMED:12520541) ]. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins. |
Family alignment: |
There are 0 S_100 domains in 0 proteins in SMART's nrdb database.
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Binding / catalysis: calcium
Primary literature is listed below; Automatically-derived, secondary literature is also avaliable.
- Sastry M et al.
- The three-dimensional structure of Ca(2+)-bound calcyclin: implications forCa(2+)-signal transduction by S100 proteins.
- Structure. 1998; 6: 223-31
- Display abstract
BACKGROUND: Calcyclin is a member of the S100 subfamily of EF-hand Ca(2+)-bindingproteins. This protein has implied roles in the regulation of cell growth anddivision, exhibits deregulated expression in association with celltransformation, and is found in high abundance in certain breast cancer celllines. The novel homodimeric structural motif first identified for apo calcyclin raised the possibility that S100 proteins recognize their targets in a mannerthat is distinctly different from that of the prototypical EF-hand Ca2+ sensor,calmodulin. The NMR solution structure of Ca(2+)-bound calcyclin has beendetermined in order to identify Ca(2+)-induced structural changes and to obtaininsights into the mechanism of Ca(2+)-triggered target protein recognition.RESULTS: The three-dimensional structure of Ca(2+)-bound calcyclin was calculatedwith 1372 experimental constraints, and is represented by an ensemble of 20structures that have a backbone root mean square deviation of 1.9 A for the eighthelices. Ca(2+)-bound calcyclin has the same symmetric homodimeric fold asobserved for the apo protein. The helical packing within the globular domains andthe subunit interface also change little upon Ca2+ binding. A distinct homologywas found between the Ca(2+)-bound states of the calcyclin subunit and themonomeric S100 protein calbindin D9k. CONCLUSIONS: Only very modestCa(2+)-induced changes are observed in the structure of calcyclin, in sharpcontrast to the domain-opening that occurs in calmodulin and relatedCa(2+)-sensor proteins. Thus, calcyclin, and by inference other members of theS100 family, must have a different mode for transducing Ca2+ signals andrecognizing target proteins. This proposal raises significant questionsconcerning the purported roles of S100 proteins as Ca2+ sensors.
3D Structures of S_100 domains in PDB
PDB code | Main view | Title |
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1a03 | THE THREE-DIMENSIONAL STRUCTURE OF CA2+-BOUND CALCYCLIN: IMPLICATIONS FOR CA2+-SIGNAL TRANSDUCTION BY S100 PROTEINS, NMR, 20 STRUCTURES | |
1a4p | P11 (S100A10), LIGAND OF ANNEXIN II | |
1b1g | SOLVATED REFINEMENT OF CA-LOADED CALBINDIN D9K | |
1b4c | SOLUTION STRUCTURE OF RAT APO-S100B USING DIPOLAR COUPLINGS | |
1boc | THE SOLUTION STRUCTURES OF MUTANT CALBINDIN D9K'S, AS DETERMINED BY NMR, SHOW THAT THE CALCIUM BINDING SITE CAN ADOPT DIFFERENT FOLDS | |
1bod | THE SOLUTION STRUCTURES OF MUTANT CALBINDIN D9K'S, AS DETERMINED BY NMR, SHOW THAT THE CALCIUM BINDING SITE CAN ADOPT DIFFERENT FOLDS | |
1bt6 | P11 (S100A10), LIGAND OF ANNEXIN II IN COMPLEX WITH ANNEXIN II N-TERMINUS | |
1cb1 | THREE-DIMENSIONAL SOLUTION STRUCTURE OF CA2+-LOADED PORCINE CALBINDIN D9K DETERMINED BY NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY | |
1cdn | SOLUTION STRUCTURE OF (CD2+)1-CALBINDIN D9K REVEALS DETAILS OF THE STEPWISE STRUCTURAL CHANGES ALONG THE APO--> (CA2+)II1--> (CA2+)I,II2 BINDING PATHWAY | |
1cfp | S100B (S100BETA) NMR DATA WAS COLLECTED FROM A SAMPLE OF CALCIUM FREE PROTEIN AT PH 6.3 AND A TEMPERATURE OF 311 K AND 1.7-6.9 MM CONCENTRATION, 25 STRUCTURES | |
1clb | DETERMINATION OF THE SOLUTION STRUCTURE OF APO CALBINDIN D9K BY NMR SPECTROSCOPY | |
1cnp | THE STRUCTURE OF CALCYCLIN REVEALS A NOVEL HOMODIMERIC FOLD FOR S100 CA2+-BINDING PROTEINS, NMR, 22 STRUCTURES | |
1d1o | COOPERATIVITY IN EF-HAND CA2+-BINDING PROTEINS: EVIDENCE OF SITE-SITE COMMUNICATION FROM BINDING-INDUCED CHANGES IN STRUCTURE AND DYNAMICS OF N56A CALBINDIN D9K | |
1dt7 | SOLUTION STRUCTURE OF THE C-TERMINAL NEGATIVE REGULATORY DOMAIN OF P53 IN A COMPLEX WITH CA2+-BOUND S100B(BB) | |
1e8a | The three-dimensional structure of human S100A12 | |
1gqm | The structure of S100A12 in a hexameric form and its proposed role in receptor signalling | |
1ht9 | DOMAIN SWAPPING EF-HANDS | |
1ig5 | BOVINE CALBINDIN D9K BINDING MG2+ | |
1igv | BOVINE CALBINDIN D9K BINDING MN2+ | |
1irj | Crystal Structure of the MRP14 complexed with CHAPS | |
1j55 | The Crystal Structure of Ca+-bound Human S100P Determined at 2.0A Resolution by X-ray | |
1jwd | Ca2+-induced Structural Changes in Calcyclin: High-resolution Solution Structure of Ca2+-bound Calcyclin. | |
1k2h | Three-dimensional Solution Structure of apo-S100A1. | |
1k8u | CRYSTAL STRUCTURE OF CALCIUM-FREE (OR APO) HUMAN S100A6; CYS3MET MUTANT (SELENOMETHIONINE DERIVATIVE) | |
1k96 | CRYSTAL STRUCTURE OF CALCIUM BOUND HUMAN S100A6 | |
1k9k | CRYSTAL STRUCTURE OF CALCIUM BOUND HUMAN S100A6 | |
1k9p | CRYSTAL STRUCTURE OF CALCIUM FREE (OR APO) HUMAN S100A6 | |
1kcy | NMR solution structure of apo calbindin D9k (F36G + P43M mutant) | |
1kqv | Family of NMR Solution Structures of Ca Ln Calbindin D9K | |
1ksm | AVERAGE NMR SOLUTION STRUCTURE OF CA LN CALBINDIN D9K | |
1kso | CRYSTAL STRUCTURE OF APO S100A3 | |
1m31 | Three-Dimensional Solution Structure of Apo-Mts1 | |
1mho | THE 2.0 A STRUCTURE OF HOLO S100B FROM BOVINE BRAIN | |
1mq1 | Ca2+-S100B-TRTK-12 complex | |
1mr8 | MIGRATION INHIBITORY FACTOR-RELATED PROTEIN 8 FROM HUMAN | |
1mwn | Solution NMR structure of S100B bound to the high-affinity target peptide TRTK-12 | |
1n65 | FAMILY OF NMR SOLUTION STRUCTURES OF CA CE CALBINDIN D9K IN DENATURATING CONDITIONS | |
1nsh | Solution Structure of Rabbit apo-S100A11 (19 models) | |
1odb | THE CRYSTAL STRUCTURE OF HUMAN S100A12 - COPPER COMPLEX | |
1ozo | Three-dimensional solution structure of apo-S100P protein determined by NMR spectroscopy | |
1psb | Solution structure of calcium loaded S100B complexed to a peptide from N-Terminal regulatory domain of NDR kinase. | |
1psr | HUMAN PSORIASIN (S100A7) | |
1qlk | SOLUTION STRUCTURE OF CA(2+)-LOADED RAT S100B (BETABETA) NMR, 20 STRUCTURES | |
1qls | P11 (S100A10), LIGAND OF ANNEXIN II IN COMPLEX WITH ANNEXIN II N-TERMINUS | |
1sym | 3-D SOLUTION STRUCTURE OF REDUCED APO-S100B FROM RAT, NMR, 20 STRUCTURES | |
1uwo | CALCIUM FORM OF HUMAN S100B, NMR, 20 STRUCTURES | |
1xk4 | Crystal structure of human calprotectin(S100A8/S100A9) | |
1xyd | NMR Solution Structure of Rat Zinc-Calcium-S100B, 20 Structures | |
1yur | Solution structure of apo-S100A13 (minimized mean structure) | |
1yus | Solution structure of apo-S100A13 | |
1yut | Solution structure of Calcium-S100A13 (minimized mean structure) | |
1yuu | Solution structure of Calcium-S100A13 | |
1zfs | Solution structure of S100A1 bound to calcium | |
2bca | HIGH-RESOLUTION SOLUTION STRUCTURE OF CALCIUM-LOADED CALBINDIN D9K | |
2bcb | HIGH-RESOLUTION SOLUTION STRUCTURE OF CALCIUM-LOADED CALBINDIN D9K | |
2cnp | HIGH RESOLUTION SOLUTION STRUCTURE OF APO RABBIT CALCYCLIN, NMR, 22 STRUCTURES | |
2cxj | 3D Solution Structure of S100A13 | |
2egd | Crystal structure of human S100A13 in the Ca2+-bound state | |
2h2k | Crystal Structure Analysis of Human S100A13 | |
2h61 | X-ray structure of human Ca2+-loaded S100B | |
2jpt | Structural changes induced in apo-s100a1 protein by the disulphide formation between its CYS85 residue and b-mercaptoethanol | |
2jtt | Solution structure of calcium loaded S100A6 bound to C-terminal Siah-1 interacting protein | |
2k2f | Solution structure of Ca2+-S100A1-RyRP12 | |
2k7o | Ca2+-S100B, refined with RDCs | |
2k8m | S100A13-C2A binary complex structure | |
2kax | Solution structure and dynamics of S100A5 in the apo and Ca2+ -bound states | |
2kay | Solution structure and dynamics of S100A5 in the Ca2+ -bound states | |
2kbm | Ca-S100A1 interacting with TRTK12 | |
2ki4 | FGF1-S100A13 complex structure: key component in non-classical path way of FGF1 | |
2ki6 | The FGF1-S100A13-C2A hetero-hexameric complex structure: A component in the non-classical pathway for FGF1 secretion | |
2kot | Solution structure of S100A13 with a drug amlexanox | |
2l0p | Solution structure of human apo-S100A1 protein by NMR spectroscopy | |
2l50 | Solution structure of apo S100A16 | |
2l51 | Solution structure of calcium bound S100A16 | |
2l5x | Solution structure of IL1A-S100A13 complex | |
2le9 | RAGEC2-S100A13 tetrameric complex | |
2lhl | Chemical Shift Assignments and solution structure of human apo-S100A1 E32Q mutant | |
2lls | solution structure of human apo-S100A1 C85M | |
2llt | Post-translational S-nitrosylation is an endogenous factor fine-tuning human S100A1 protein properties | |
2llu | Post-translational S-nitrosylation is an endogenous factor fine-tuning human S100A1 protein properties | |
2lnk | Solution structure of Ca-bound S100A4 in complex with non-muscle myosin IIA | |
2lp2 | Solution structure and dynamics of human S100A1 protein modified at cysteine 85 with homocysteine disulfide bond formation in calcium saturated form | |
2lp3 | Solution structure of S100A1 Ca2+ | |
2luc | Solution Structure of human S100 calcium-binding protein A11 | |
2lux | Calcium saturated form of human C85M S100A1 mutant | |
2m0r | Solution structure and dynamics of human S100A14 | |
2m1k | 2M1K | |
2m3w | Protein structure determination from a set of 4D NOESY | |
2m49 | Structural Insights into Human S100B and Basic Fibroblast Growth Factor (FGF2) Interaction | |
2m9g | Solution structure of calcium-bound human S100A12 | |
2maz | Backbone 1H, 13C, and 15N Chemical Shift Assignments for Bovine Apo Calbindin | |
2mjw | 2MJW | |
2mrd | 2MRD | |
2pru | NMR Structure of Human apoS100B at 10C | |
2psr | HUMAN PSORIASIN (S100A7) CA2+ AND ZN2+ BOUND FORM (CRYSTAL FORM II) | |
2q91 | Structure of the Ca2+-Bound Activated Form of the S100A4 Metastasis Factor | |
2rgi | Crystal structure of Ca2+-free S100A2 at 1.6 A resolution | |
2wc8 | S100A12 complex with zinc in the absence of calcium | |
2wcb | S100A12 complex with zinc in the absence of calcium | |
2wce | calcium-free (apo) S100A12 | |
2wcf | calcium-free (apo) S100A12 | |
2wnd | Structure of an S100A7 triple mutant | |
2wor | co-structure of S100A7 with 1,8 ANS | |
2wos | Structure of human S100A7 in complex with 2,6 ANS | |
2y5i | S100Z from zebrafish in complex with calcium | |
3c1v | The 1.5 A Crystal structure of Ca2+-bound S100A4 | |
3cga | Crystal structure of metastasis-associated protein S100A4 in the active, calcium-bound form | |
3cr2 | X-ray structure of bovine Zn(2+),Ca(2+)-S100B | |
3cr4 | X-ray structure of bovine Pnt,Ca(2+)-S100B | |
3cr5 | X-ray structure of bovine Pnt-Zn(2+),Ca(2+)-S100B | |
3czt | Crystal Structure of S100B in the Calcium and Zinc Loaded State at pH 9 | |
3d0y | Crystal Structure of S100B in the Calcium and Zinc Loaded State at pH 6.5 | |
3d10 | Crystal Structure of S100B in the Calcium and Zinc Loaded State at pH 10.0 | |
3gk1 | X-ray structure of bovine SBi132,Ca(2+)-S100B | |
3gk2 | X-ray structure of bovine SBi279,Ca(2+)-S100B | |
3gk4 | X-ray structure of bovine SBi523,Ca(2+)-S100B | |
3hcm | Crystal structure of human S100B in complex with S45 | |
3icb | THE REFINED STRUCTURE OF VITAMIN D-DEPENDENT CALCIUM-BINDING PROTEIN FROM BOVINE INTESTINE. MOLECULAR DETAILS, ION BINDING, AND IMPLICATIONS FOR THE STRUCTURE OF OTHER CALCIUM-BINDING PROTEINS | |
3iqo | 1.5 angstrom X-ray structure of bovine Ca(2+)-S100B | |
3iqq | X-ray structure of bovine TRTK12-Ca(2+)-S100B | |
3ko0 | Structure of the tfp-ca2+-bound activated form of the s100a4 Metastasis factor | |
3lk0 | X-ray structure of bovine SC0067,Ca(2+)-S100B | |
3lk1 | X-ray structure of bovine SC0322,Ca(2+)-S100B | |
3lle | X-ray structure of bovine SC0322,Ca(2+)-S100B | |
3m0w | Structure of S100A4 with PCP | |
3nsi | Crystal Structure of the Post-Refolded S100A3 Protein Expressed in Insect Cell | |
3nsk | Crystal Structure of the Post-Refolded S100A3 R51A Mutant Expressed in Insect Cell | |
3nsl | Crystal Structure of S100A3 C30A+C68A double mutant expressed in insect cell | |
3nso | Crystal Structure of S100A3 Protein Expressed in Insect Cell | |
3nxa | X-ray structure of the apo form of human S100A16 | |
3psr | HUMAN PSORIASIN (S100A7) CA2+ BOUND FORM (CRYSTAL FORM I) | |
3rlz | 2.0 Angstrom X-ray structure of bovine Ca(2+)-S100B D63N | |
3rm1 | 1.24 Angstrom X-ray structure of bovine TRTK12-Ca(2+)-S100B D63N | |
3zwh | Ca2+-bound S100A4 C3S, C81S, C86S and F45W mutant complexed with myosin IIA | |
4aqi | Structure of human S100A15 bound to zinc and calcium | |
4aqj | Structure of human S100A7 D24G bound to zinc and calcium | |
4cfq | Ca-bound truncated (delta13C) and C3S, C81S and C86S mutated S100A4 complexed with non-muscle myosin IIA | |
4cfr | Ca-bound S100A4 C3S, C81S, C86S and F45W mutant complexed with non- muscle myosin IIA | |
4dir | 2.6 Angstrom X-ray structure of human CA(2+)-S100A5 | |
4drw | Crystal Structure of the Ternary Complex between S100A10, an Annexin A2 N-terminal Peptide and an AHNAK Peptide | |
4duq | The Structure of Ca2+-loaded S100A2 at 1.3A resolution | |
4eto | Structure of S100A4 in complex with non-muscle myosin-IIA peptide | |
4fqo | Crystal Structure of Calcium-Loaded S100B Bound to SBi4211 | |
4ftg | The crystal structure of an AHNAK peptide in complex with the S100A10/AnxA2 heterotetramer | |
4ggf | Crystal structure of Mn2+ bound calprotectin | |
4hre | Crystal Structure of p11/Annexin A2 Heterotetramer in Complex with SMARCA3 Peptide | |
4hrg | Crystal Structure of p11-Annexin A2(N-terminal) Fusion Protein in Complex with AHNAK1 Peptide | |
4hrh | Crystal Structure of p11-Annexin A2(N-terminal) Fusion Protein in Complex with SMARCA3 Peptide | |
4hsz | Structure of truncated (delta8C) S100A4 | |
4icb | PROLINE CIS-TRANS ISOMERS IN CALBINDIN D9K OBSERVED BY X-RAY CRYSTALLOGRAPHY | |
4p2y | 4P2Y | |
4pcw | 4PCW | |
4pdz | 4PDZ | |
4pe0 | 4PE0 | |
4pe1 | 4PE1 | |
4pe4 | 4PE4 | |
4pe7 | 4PE7 | |
4xjk | 4XJK | |
4xyn | 4XYN | |
4ybh | 4YBH | |
5csf | 5CSF | |
5csi | 5CSI | |
5csj | 5CSJ | |
5csn | 5CSN | |
5d7f | 5D7F | |
5dkn | 5DKN | |
5dkq | 5DKQ | |
5dkr | 5DKR | |
5er4 | 5ER4 | |
5er5 | 5ER5 | |
5hlo | 5HLO | |
5hlv | 5HLV | |
5i8n | 5I8N |
PFAM | S_100 |
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INTERPRO | IPR013787 |